I`ve fed the source a 0dbfs 1kb tone
The 0 dBFS tone is being generated by what device?
set the full scale voltage according to that number
So, in SignalScope, you tweaked the user-defined full-scale voltage until the oscilloscope indicated a level of 0.73 Vrms on the appropriate input channel. What full-scale voltage did you settle on?
Getting the same reading suggests that you could be clipping on the input channel and that you are reading a peak voltage (Vpk) rather than an rms voltage (and that your full-scale voltage is incorrect).
What does the waveform look like in the oscilloscope?